PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096755.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 162aa    MW: 17976.3 Da    PI: 8.3669
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096755.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.33.2e-44131121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaC++lrr+C++dC+++pyfpa++p+kfa vh++FGasnv k+l++lpe +r da++s+vyeA+ar+rdPvyG+vg+i+ lqqq++ l+a+la
  XP_011096755.1  13 PCAACRLLRRRCTEDCMFSPYFPADEPHKFASVHRVFGASNVNKMLQELPEYQRGDAVRSMVYEANARMRDPVYGCVGTISYLQQQIDALRAQLA 107
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_011096755.1 108 LAQAE 112
                     99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.68112113IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-4413110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKEVGRKQGA PSPCAACRLL RRRCTEDCMF SPYFPADEPH KFASVHRVFG ASNVNKMLQE  60
LPEYQRGDAV RSMVYEANAR MRDPVYGCVG TISYLQQQID ALRAQLALAQ AEVVHLRAAA  120
STPQNTSPSG SGSPTSYTFK PSFDMDTVVQ QSSFRESLWS CT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096755.11e-120PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE92e-66LBD4_ARATH; LOB domain-containing protein 4
TrEMBLM1AGH32e-82M1AGH3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000222865e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-50LOB domain-containing protein 4